
Aaron Aguirre, MD, PhD
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Dr. Aguirre is a physician-scientist and an attending critical care cardiologist at the Massachusetts General Hospital and an Assistant Professor of Medicine at Harvard Medical School. He received his M.D. from Harvard Medical School and his Ph.D. in electrical and biomedical engineering from the Massachusetts Institute of Technology, where he worked with Prof. James Fujimoto on high resolution optical coherence tomography methods. He then did residency and fellowship training at the Brigham and Women’s Hospital before completing a postdoctoral research fellowship in cardiovascular imaging at the MGH Center for Systems Biology with Prof. Ralph Weissleder. Dr. Aguirre's laboratory at MGH is now part of the Wellman Center and the Center for Systems Biology and is closely affiliated with the MGH Cardiovascular Research Center. As a critical care cardiologist in the MGH Heart Center Intensive Care Unit, his clinical practice involves care of medical and surgical patients with all forms of advanced heart disease. He has particular interest in the area of acute decompensated heart failure and the use of mechanical circulatory support devices.
Research Themes:
Advanced Cardiovascular Imaging Methods
The laboratory develops new imaging tools for cardiovascular applications, with a focus on optical and ultrasound methods. These include techniques for studying heart function at the single-cell level in mouse models of disease. The team has pioneered intravital microscopy methods utilizing multiphoton microscopy and optical coherence tomography to visualize and measure myoctye and microvascular function. These techniques are powerful for exploring many aspects of cellular physiology in the heart.
In addition, the team is developing optical and ultrasound based methods for coronary imaging and for measuring systemic microcirculatory perfusion in heart failure and circulatory shock. Studies in the laboratory frequently combine fundamental technical development, basic investigation, and translational and clinical studies in large animal models and in clinical patients.
Artificial Intelligence in the Intensive Care Unit
The laboratory has multiple projects aimed at integrating artificial intelligence into clinical decision making for hospitalized patients. The team has led the curation of a large collection of inpatient monitoring data including more than 17 million hours of telemetry waveforms from the intensive care units and other clinical wards at the Massachusetts General Hospital. This data can be readily linked with other electronic health record data such as laboratory studies, discrete vital sign and flowsheet information, and imaging records.

The laboratory has a particular interest in the development of new signal processing and machine learning algorithms applied to the high frequency telemetry waveforms. Specific projects focus on clinical needs in the care of patients with acute decompensated heart failure, respiratory failure, circulatory shock, and cardiac arrest. The team collaborates closely with the Biomedical Engineering team at Mass General Brigham in this effort.
Cardiovascular Hemodynamics and Critical Care Physiology
The laboratory utilizes data from the intensive care units to advance understanding of fundamental physiology of cardiovascular disease and critical illness. The group has a particular interest in the hemodynamics of heart failure, shock, and multi-system organ failure and the role of microcirculatory dysfunction in these conditions.

Recent work has led to the development of a new measure for perfusion called tissue perfusion pressure (TPP), which incorporates a fundamental measure of the vasculature called the critical closing pressure (Pcrit). Ongoing studies funded by the National Institutes of Health aim to advance TPP as a guide for treating patients in the intensive care unit.
Military Medicine
The laboratory has a deep interest in developing new technologies that can support the care of wounded soldiers. The group participates in the Military Medical Photonics Program, a longstanding research program funded by the United States Air Force Office of Scientific Research.

Contact Us
The laboratory is located on the MGH Main campus:
40 Blossom Street
Bartlett Building, 4th Floor
Boston, MA 02114
Dr. Aguirre's Office: Thier Building, Room 212

Recent Publications
Jaffe AT, Pallarès-López R, Raines JK, Aguirre AD, Anthony BW
Noninvasive Quantitative Compression Ultrasound Central Venous Pressure: A Clinical Pilot Study. BME Front. 2025;6:0115 - PMID: 40110344 - PMCID: PMC11922486 - DOI: 10.34133/bmef.0115- More publications ...