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Turcotte R, Wu JW, Lin CP

Intravital multiphoton photoconversion with a cell membrane dye.
J Biophotonics. 2016;10(2):206-210 - PMID: 27433967 - DOI: 10.1002/jbio.201600077

Aguirre AD, Shelton KT

Remote monitoring in the use of extracorporeal membrane oxygenation and acute mechanical circulatory support.
Curr Opin Crit Care. 2022;28(3):308-314 - PMID: 35653252 - DOI: 10.1097/MCC.0000000000000949

Saito TI, Fujisaki J, Carlson AL, Lin CP, Sykes M

Persistence of donor-derived protein in host myeloid cells after induced rejection of engrafted allogeneic bone marrow cells.
Exp Hematol. 2010;38(4):333-9 - PMID: 20167247 - PMCID: PMC3965294 - DOI: 10.1016/j.exphem.2010.02.003

Kim P, Puoris'haag M, Côté D, Lin CP, Yun SH

In vivo confocal and multiphoton microendoscopy.
J Biomed Opt. 2008;13(1):010501 - PMID: 18315346 - PMCID: PMC2752311 - DOI: 10.1117/1.2839043

Pestana N, Mortensen LJ, Runnels JP, Vickers D, Murthy SK, Lin CP, Niedre M

Improved diffuse fluorescence flow cytometer prototype for high sensitivity detection of rare circulating cells in vivo.
J Biomed Opt. 2013;18(7):077002 - PMID: 23831714 - PMCID: PMC3702234 - DOI: 10.1117/1.JBO.18.7.077002

Kulkarni MB, Reed MS, Cao X, García HA, Ochoa MI, Jiang S, Hasan T, Doyley MM, Pogue BW

Combined dual-channel fluorescence depth sensing of indocyanine green and protoporphyrin IX kinetics in subcutaneous murine tumors.
J Biomed Opt. 2024;30(Suppl 1):S13709 - PMID: 39559531 - PMCID: PMC11571966 - DOI: 10.1117/1.JBO.30.S1.S13709

Paul A, Nguyen C, Hasan T, Mallidi S

Reduction of photobleaching effects in photoacoustic imaging using noise agnostic, platform-flexible deep-learning methods.
J Biomed Opt. 2025;30(Suppl 3):S34102 - PMID: 40443946 - PMCID: PMC12118878 - DOI: 10.1117/1.JBO.30.S3.S34102

Aguirre AD, Chen Y, Bryan B, Mashimo H, Huang Q, Connolly JL, Fujimoto JG

Cellular resolution ex vivo imaging of gastrointestinal tissues with optical coherence microscopy.
J Biomed Opt. 2010;15(1):016025 - PMID: 20210470 - PMCID: PMC2847935 - DOI: 10.1117/1.3322704

Chen Y, Andrews PM, Aguirre AD, Schmitt JM, Fujimoto JG

High-resolution three-dimensional optical coherence tomography imaging of kidney microanatomy ex vivo.
J Biomed Opt. 2007;12(3):034008 - PMID: 17614716 - DOI: 10.1117/1.2736421

Aguirre AD, Apiou-Sbirlea G, Roblyer D, Tromberg BJ

Special Section Guest Editorial: Translational Biophotonics.
J Biomed Opt. 2017;22(12):1-2 - PMID: 29282907 - DOI: 10.1117/1.JBO.22.12.121601

Zhou C, Wang Y, Aguirre AD, Tsai TH, Cohen DW, Connolly JL, Fujimoto JG

Ex vivo imaging of human thyroid pathology using integrated optical coherence tomography and optical coherence microscopy.
J Biomed Opt. 2010;15(1):016001 - PMID: 20210448 - PMCID: PMC2844129 - DOI: 10.1117/1.3306696

Apiou-Sbirlea G, Evans CL, Kelly KM, Tromberg BJ

Special Section Guest Editorial: Translational biophotonics.
J Biomed Opt. 2016;21(12):124002 - PMID: 27999859 - DOI: 10.1117/1.JBO.21.12.124002

Li Z, Marks H, Evans CL, Apiou-Sbirlea G

Sensing, monitoring, and release of therapeutics: the translational journey of next generation bandages (Erratum).
J Biomed Opt. 2019;24(2):1 - PMID: 30756529 - PMCID: PMC6988180 - DOI: 10.1117/1.JBO.24.2.029802

Li Z, Marks H, Evans C, Apiou-Sbirlea G

Sensing, monitoring, and release of therapeutics: the translational journey of next generation bandages.
J Biomed Opt. 2018;24(2):1-9 - PMID: 30592189 - PMCID: PMC6987519 - DOI: 10.1117/1.JBO.24.2.021201

Osseiran S, Roider EM, Wang H, Suita Y, Murphy M, Fisher DE, Evans CL

Non-Euclidean phasor analysis for quantification of oxidative stress in ex vivo human skin exposed to sun filters using fluorescence lifetime imaging microscopy.
J Biomed Opt. 2017;22(12):1-10 - PMID: 29222855 - PMCID: PMC5722918 - DOI: 10.1117/1.JBO.22.12.125004

Celli JP, Rizvi I, Evans CL, Abu-Yousif AO, Hasan T

Quantitative imaging reveals heterogeneous growth dynamics and treatment-dependent residual tumor distributions in a three-dimensional ovarian cancer model.
J Biomed Opt. 2010;15(5):051603 - PMID: 21054077 - PMCID: PMC2948043 - DOI: 10.1117/1.3483903

Ilina A, Ochoa Mendoza MI, Cao X, Hasan T, Pogue BW

ALA-based photodynamic priming in murine skin increases blood flow and oxygenation.
J Biomed Opt. 2025;30(Suppl 3):S34106 - PMID: 40949529 - PMCID: PMC12433272 - DOI: 10.1117/1.JBO.30.S3.S34106

Schmidt G, McAuley R, Bouma BE, Uribe-Patarroyo N

Asynchronous optical coherence elastography and directional phase gradient analysis.
J Biomed Opt. 2025;30(12):124506 - PMID: 40979890 - PMCID: PMC12447186 - DOI: 10.1117/1.JBO.30.12.124506

Harper DJ, Kim Y, Gómez-Ramírez A, Vakoc BJ

Needle guidance with Doppler-tracked polarization-sensitive optical coherence tomography.
J Biomed Opt. 2023;28(10):102910 - PMID: 37799938 - PMCID: PMC10548115 - DOI: 10.1117/1.JBO.28.10.102910

Khan S, Song B, Mallidi S, Li S, Liu H, Bilal Hussain MA, Siddiqui S, Khan AP, Akhtar K, Siddiqui SA, Hasan SA, Hopper C, Bown SG, Liang R, Hasan T, Celli JP

Clinical assessment of a low-cost, hand-held, smartphone-attached intraoral imaging probe for 5-aminolevulinic acid photodynamic therapy monitoring and guidance.
J Biomed Opt. 2023;28(8):082809 - PMID: 37483565 - PMCID: PMC10362156 - DOI: 10.1117/1.JBO.28.8.082809

Saytashev I, Yoon YC, Vakoc BJ, Vasudevan S, Hammer DX

Improved in vivo optical coherence tomography imaging of animal peripheral nerves using a prism nerve holder.
J Biomed Opt. 2023;28(2):026002 - PMID: 36785561 - PMCID: PMC9921515 - DOI: 10.1117/1.JBO.28.2.026002

Hickok NJ, Li B, Oral E, Zaat SAJ, Armbruster DA, Atkins GJ, Chen AF, Coraça-Huber DC, Dai T, Greenfield EM, Kasinath R, Libera M, Marques CNH, Moriarty TF, Scott Phillips K, Raghuraman K, Ren D, Rimondini L, Saeed K, Schaer TP, Schwarz EM, Spiegel C, Stoodley P, Truong VK, Tsang SJ, Wildemann B, Zelmer AR, Zinkernagel AS

The 2023 Orthopedic Research Society's international consensus meeting on musculoskeletal infection: Summary from the in vitro section.
J Orthop Res. 2024;42(3):512-517 - PMID: 38146070 - DOI: 10.1002/jor.25774

Ong J, Godfrey R, Nazarian A, Tam J, Drake L, Isaacson B, Pasquina P, Williams D

Antimicrobial blue light as a biofilm management therapy at the skin-implant interface in an ex vivo percutaneous osseointegrated implant model.
J Orthop Res. 2023;41(9):2046-2054 - PMID: 36815575 - DOI: 10.1002/jor.25535

Zettergren E, Swamy T, Runnels J, Lin CP, Niedre M

Tomographic sensing and localization of fluorescently labeled circulating cells in mice in vivo.
Phys Med Biol. 2012;57(14):4627-41 - PMID: 22750660 - PMCID: PMC3555500 - DOI: 10.1088/0031-9155/57/14/4627

Kvernebo K, Liv Kristin Wikslund L, Drezek K, Jaramillo A, Capone L, Helmy M, Zhao Y, Aguirre A, D'Alessandro D

COVID-19 Patients Have Peripheral Microvascular Dysfunction and Tissue Hypoxia in Spite of Successful Treatment of Lung Failure: A Proof of Concept Study.
Microcirculation. 2025;32(5):e70014 - PMID: 40598822 - DOI: 10.1111/micc.70014

Chen Y, Aguirre AD, Ruvinskaya L, Devor A, Boas DA, Fujimoto JG

Optical coherence tomography (OCT) reveals depth-resolved dynamics during functional brain activation.
J Neurosci Methods. 2008;178(1):162-73 - PMID: 19121336 - PMCID: PMC3004397 - DOI: 10.1016/j.jneumeth.2008.11.026

Ong CS, Reinertsen E, Moonsamy P, Young K, Song S, Axtell AL, Wolfe SB, Mohan N, Jassar AS, Aguirre AD, Sundt TM

Late onset atrial fibrillation in patients undergoing surgical aortic valve replacement.
J Card Surg. 2021;37(2):285-289 - PMID: 34699088 - DOI: 10.1111/jocs.16093

Yamamoto E, Xing L, Higuma T, Minami Y, Bryniarski K, Zanchin T, Wang Z, Aguirre AD, Lee H, Jang IK

Dynamic neointimal pattern after drug-eluting stent implantation defined by optical coherence tomography.
Coron Artery Dis. 2017;28(7):557-563 - PMID: 28704243 - DOI: 10.1097/MCA.0000000000000534

Minami Y, Wang Z, Aguirre AD, Lee S, Uemura S, Soeda T, Vergallo R, Raffel OC, Barlis P, Itoh T, Lee H, Fujimoto J, Jang IK

Quantitative analysis of the side-branch orifice after bifurcation stenting using en-face processing of OCT images: a comparison between Xience V and Resolute Integrity stents.
Coron Artery Dis. 2016;27(1):19-28 - PMID: 26554662 - PMCID: PMC4679565 - DOI: 10.1097/MCA.0000000000000319

Wang Z, Cho YS, Soeda T, Minami Y, Xing L, Jia H, Aguirre A, Vergallo R, Lee H, Fujimoto JG, Yu B, Jang IK

Three-dimensional morphological response of lipid-rich coronary plaques to statin therapy: a serial optical coherence tomography study.
Coron Artery Dis. 2016;27(5):350-6 - PMID: 27105047 - PMCID: PMC4912393 - DOI: 10.1097/MCA.0000000000000370

Horner BM, Ferguson KK, Randolph MA, Spencer JA, Carlson AL, Hirsh EL, Lin CP, Butler PE

In vivo observations of cell trafficking in allotransplanted vascularized skin flaps and conventional skin grafts.
J Plast Reconstr Aesthet Surg. 2009;63(4):711-9 - PMID: 19324598 - PMCID: PMC2835845 - DOI: 10.1016/j.bjps.2009.01.036

Wissmeyer G, Kassab MB, Kawamura Y, Aguirre AD, Jaffer FA

Intravital Microscopy in Atherosclerosis Research.
Methods Mol Biol. 2022;2419:645-658 - PMID: 35237994 - PMCID: PMC9052099 - DOI: 10.1007/978-1-0716-1924-7_40

Haase C, Richter D, Lin CP

Laser Micromachining of Bone as a Tool for Studying Bone Marrow Biology.
Methods Mol Biol. 2023;2567:163-180 - PMID: 36255701 - PMCID: PMC10287113 - DOI: 10.1007/978-1-0716-2679-5_11

Broekgaarden M, Bulin AL, Hasan T

High-Throughput Examination of Therapy-Induced Alterations in Redox Metabolism in Spheroid and Microtumor Models.
Methods Mol Biol. 2022;2451:71-80 - PMID: 35505011 - DOI: 10.1007/978-1-0716-2099-1_6

Bulin AL, Broekgaarden M, Hasan T

Analysis of Treatment Effects on Structurally Complex Microtumor Cultures Using a Comprehensive Image Analysis Procedure.
Methods Mol Biol. 2022;2451:59-70 - PMID: 35505010 - DOI: 10.1007/978-1-0716-2099-1_5

Bulin AL, Hasan T

Spatiotemporal Tracking of Different Cell Populations in Cancer Organoid Models for Investigations on Photodynamic Therapy.
Methods Mol Biol. 2022;2451:81-90 - PMID: 35505012 - DOI: 10.1007/978-1-0716-2099-1_7

Chowdhury MM, Piao Z, Albaghdadi MS, Coughlin PA, Rudd JHF, Tearney GJ, Jaffer FA

Intravascular Fluorescence Molecular Imaging of Atherosclerosis.
Methods Mol Biol. 2022;2419:853-872 - PMID: 35238006 - PMCID: PMC9052094 - DOI: 10.1007/978-1-0716-1924-7_52

Nath S, Pigula M, Hasan T, Rizvi I

A Perfusion Model to Evaluate Response to Photodynamic Therapy in 3D Tumors.
Methods Mol Biol. 2022;2451:49-58 - PMID: 35505009 - DOI: 10.1007/978-1-0716-2099-1_4

Obaid G, Hasan T

Subcutaneous Xenograft Models for Studying PDT In Vivo.
Methods Mol Biol. 2022;2451:127-149 - PMID: 35505015 - PMCID: PMC10516195 - DOI: 10.1007/978-1-0716-2099-1_10

Obaid G, Mai Z, Hasan T

Orthotopic Models of Pancreatic Cancer to Study PDT.
Methods Mol Biol. 2022;2451:163-173 - PMID: 35505017 - PMCID: PMC10515273 - DOI: 10.1007/978-1-0716-2099-1_12

Park D, Spencer JA, Lin CP, Scadden DT

Sequential in vivo imaging of osteogenic stem/progenitor cells during fracture repair.
J Vis Exp. 2014;(87):ePub - PMID: 24894331 - PMCID: PMC4206246 - DOI: 10.3791/51289

Kuzma BA, Pence IJ, Ho A, Evans CL

Visualizing and Quantifying Pharmaceutical Compounds within Skin using Coherent Raman Scattering Imaging.
J Vis Exp. 2021;(177):ePub - PMID: 34897272 - DOI: 10.3791/63264

Nichols AJ, Evans CL

Video-rate scanning confocal microscopy and microendoscopy.
J Vis Exp. 2011;(56):ePub - PMID: 22042305 - PMCID: PMC3227211 - DOI: 10.3791/3252

Abu-Yousif AO, Rizvi I, Evans CL, Celli JP, Hasan T

PuraMatrix encapsulation of cancer cells.
J Vis Exp. 2009;(34):ePub - PMID: 20019656 - PMCID: PMC3152243 - DOI: 10.3791/1692

Hooper BA, Domankevitz Y, Lin CP, Anderson RR

Precise, controlled laser delivery with evanescent optical waves.
Appl Opt. 1999;38(25):5511-7 - PMID: 18324060 - DOI: 10.1364/ao.38.005511

Brinkmann R, Koop N, Ozdemir M, Alt C, Schüle G, Lin CP, Birngruber R

Targeting of the retinal pigment epithelium (RPE) by means of a rapidly scanned continuous wave (CW) laser beam.
Lasers Surg Med. 2003;32(4):252-64 - PMID: 12696092 - DOI: 10.1002/lsm.10150

Lin CP, Weaver YK, Birngruber R, Fujimoto JG, Puliafito CA

Intraocular microsurgery with a picosecond Nd:YAG laser.
Lasers Surg Med. 1994;15(1):44-53 - PMID: 7997047 - DOI: 10.1002/lsm.1900150107

Framme C, Alt C, Schnell S, Brinkmann R, Lin CP

[Selective RPE laser treatment with a scanned cw laser beam in rabbits].
Ophthalmologe. 2005;102(5):491-6 - PMID: 15883846 - DOI: 10.1007/s00347-004-1139-5

Zettergren E, Vickers D, Runnels J, Lin CP, Niedre MJ

Validation of a device for fluorescence sensing of rare circulating cells with diffusive light in an optical flow phantom model.
Annu Int Conf IEEE Eng Med Biol Soc. 2011;2011:486-9 - PMID: 22254354 - PMCID: PMC3555486 - DOI: 10.1109/IEMBS.2011.6090071

De Silva P, Saad MA, Swain JWR, Mai Z, Kidd MD, Choe JJ, Camargo AP, Anand S, Chandrasekhara V, Pogue BW, Wang KK, Spring BQ, Maytin EV, Hasan T

Photodynamic priming with red light triggers adaptive immune responses in a pancreatic cancer mouse model.
J Photochem Photobiol B. 2025;265:113126 - PMID: 40007355 - PMCID: PMC11895200 - DOI: 10.1016/j.jphotobiol.2025.113126
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