Liong M, Im H, Majmudar MD, Aguirre AD, Sebas M, Lee H, Weissleder R

Magnetic ligation method for quantitative detection of microRNAs.
Adv Healthc Mater. 2014;3(7):1015-9 - PMID: 24532323 - PMCID: PMC4107040 - DOI: 10.1002/adhm.201300672

Marks HL, Cook K, Roussakis E, Cascales JP, Korunes-Miller JT, Grinstaff MW, Evans CL

Quantitative Luminescence Photography of a Swellable Hydrogel Dressing with a Traffic-Light Response to Oxygen.
Adv Healthc Mater. 2022;11(10):e2101605 - PMID: 35120400 - DOI: 10.1002/adhm.202101605

Bhandari C, Moffat A, Shah N, Khan A, Quaye M, Fakhry J, Soma S, Nguyen A, Eroy M, Malkoochi A, Brekken R, Hasan T, Ferruzzi J, Obaid G

PD-L1 Immune Checkpoint Targeted Photoactivable Liposomes (iTPALs) Prime the Stroma of Pancreatic Tumors and Promote Self-Delivery.
Adv Healthc Mater. 2024;13(19):e2304340 - PMID: 38324463 - PMCID: PMC11281872 - DOI: 10.1002/adhm.202304340

Katagiri W, Lee JH, Tetrault MA, Kang H, Jeong S, Evans CL, Yokomizo S, Santos S, Jones C, Hu S, Fakhri GE, Tsukada K, Choi HS, Kashiwagi S

Real-Time Imaging of Vaccine Biodistribution Using Zwitterionic NIR Nanoparticles.
Adv Healthc Mater. 2019;8(15):e1900035 - PMID: 31165556 - PMCID: PMC6687515 - DOI: 10.1002/adhm.201900035

Conedera FM, Runnels JM, Stein JV, Alt C, Enzmann V, Lin CP

Assessing the role of T cells in response to retinal injury to uncover new therapeutic targets for the treatment of retinal degeneration.
J Neuroinflammation. 2023;20(1):206 - PMID: 37689689 - PMCID: PMC10492418 - DOI: 10.1186/s12974-023-02867-x

Conedera FM, Kokona D, Zinkernagel MS, Stein JV, Lin CP, Alt C, Enzmann V

Macrophages coordinate immune response to laser-induced injury via extracellular traps.
J Neuroinflammation. 2024;21(1):68 - PMID: 38500151 - PMCID: PMC10949579 - DOI: 10.1186/s12974-024-03064-0

Manuel LDB, Basu D, Rollins MB, Vincely VD, Keahey P, Villiger M, Bayer CL, South PF, McPeak KM

Au Bipyramids as NIR-II Contrast Agents for In Vivo Plant Imaging.
ACS Appl Mater Interfaces. 2025;17(35):49183-49192 - PMID: 40838762 - PMCID: PMC12412101 - DOI: 10.1021/acsami.5c08908

Tonon CC, de Souza Rastelli AN, Bodahandi C, Ghosh G, Hasan T, Xu Q, Greer A, Lyons AM

Superhydrophobic Tipped Antimicrobial Photodynamic Therapy Device for the In Vivo Treatment of Periodontitis Using a Wistar Rat Model.
ACS Appl Mater Interfaces. 2023;15(43):50083-50094 - PMID: 37862708 - PMCID: PMC10800031 - DOI: 10.1021/acsami.3c12820

Lee SY, Parot VJ, Bouma BE, Villiger M

Confocal 3D reflectance imaging through multimode fiber without wavefront shaping.
Optica. 2022;9(1):112-120 - PMID: 35419464 - PMCID: PMC9005109 - DOI: 10.1364/OPTICA.446178

Schmidt G, Bouma BE, Uribe-Patarroyo N

Asynchronous, semi-reverberant elastography.
Optica. 2024;11(9):1285-1294 - PMID: 40109673 - PMCID: PMC11922557 - DOI: 10.1364/optica.528507

Zhou C, Cohen DW, Wang Y, Lee HC, Mondelblatt AE, Tsai TH, Aguirre AD, Fujimoto JG, Connolly JL

Integrated optical coherence tomography and microscopy for ex vivo multiscale evaluation of human breast tissues.
Cancer Res. 2010;70(24):10071-9 - PMID: 21056988 - PMCID: PMC3028517 - DOI: 10.1158/0008-5472.CAN-10-2968

Rizvi I, Celli JP, Evans CL, Abu-Yousif AO, Muzikansky A, Pogue BW, Finkelstein D, Hasan T

Synergistic enhancement of carboplatin efficacy with photodynamic therapy in a three-dimensional model for micrometastatic ovarian cancer.
Cancer Res. 2010;70(22):9319-28 - PMID: 21062986 - PMCID: PMC3057933 - DOI: 10.1158/0008-5472.CAN-10-1783

Calcagno DM, Ng RP, Toomu A, Zhang C, Huang K, Aguirre AD, Weissleder R, Daniels LB, Fu Z, King KR

The myeloid type I interferon response to myocardial infarction begins in bone marrow and is regulated by Nrf2-activated macrophages.
Sci Immunol. 2020;5(51):ePub - PMID: 32978242 - PMCID: PMC7808338 - DOI: 10.1126/sciimmunol.aaz1974

Vinegoni C, Aguirre AD, Lee S, Weissleder R

Imaging the beating heart in the mouse using intravital microscopy techniques.
Nat Protoc. 2015;10(11):1802-19 - PMID: 26492138 - PMCID: PMC5380003 - DOI: 10.1038/nprot.2015.119

Hsiung PL, Phatak DR, Chen Y, Aguirre AD, Fujimoto JG, Connolly JL

Benign and malignant lesions in the human breast depicted with ultrahigh resolution and three-dimensional optical coherence tomography.
Radiology. 2007;244(3):865-74 - PMID: 17630358 - DOI: 10.1148/radiol.2443061536

Chan ST, Mercaldo N, Figueiro Longo MG, Welt J, Avesta A, Lee J, Lev MH, Ratai EM, Wenke MR, Parry BA, Drake L, Anderson RR, Rauch T, Diaz-Arrastia R, Kwong KK, Hamblin M, Vakoc BJ, Gupta R

Effects of Low-Level Light Therapy on Resting-State Connectivity Following Moderate Traumatic Brain Injury: Secondary Analyses of a Double-blinded Placebo-controlled Study.
Radiology. 2024;311(2):e230999 - PMID: 38805733 - PMCID: PMC11140530 - DOI: 10.1148/radiol.230999

Lee B, Jeong S, Lee J, Kim TS, Braaf B, Vakoc BJ, Oh WY

Wide-Field Three-Dimensional Depth-Invariant Cellular-Resolution Imaging of the Human Retina.
Small. 2023;19(11):e2203357 - PMID: 36642824 - PMCID: PMC10023497 - DOI: 10.1002/smll.202203357

Poudel K, Vithiananthan T, Kim JO, Tsao H

Recent progress in cancer vaccines and nanovaccines.
Biomaterials. 2024;314:122856 - PMID: 39366184 - DOI: 10.1016/j.biomaterials.2024.122856

Cheng D, Pan T, Wang X, Tian R, Fan H, Wei L, He S, Dong R, Yan X, Wu MX, Tan R, Qu H, Lu M

An advanced inhalable dry powder, mucus-penetrating aerosol platform: Bridging Andrographolide delivery with clinical translation.
Biomaterials. 2025;322:123401 - PMID: 40347852 - DOI: 10.1016/j.biomaterials.2025.123401

Roussakis E, Ortines RV, Pinsker BL, Mooers CT, Evans CL, Miller LS, Calderon-Colon X

Theranostic biocomposite scaffold membrane.
Biomaterials. 2019;212:17-27 - PMID: 31100480 - DOI: 10.1016/j.biomaterials.2019.05.007

Yan H, Forward S, Kim KH, Wu Y, Hui J, Kashiparekh A, Yun SH

All-natural-molecule, bioluminescent photodynamic therapy results in complete tumor regression and prevents metastasis.
Biomaterials. 2023;296:122079 - PMID: 36889146 - PMCID: PMC10085841 - DOI: 10.1016/j.biomaterials.2023.122079

Vergallo R, Uemura S, Soeda T, Minami Y, Cho JM, Ong DS, Aguirre AD, Gao L, Biasucci LM, Crea F, Yu B, Lee H, Kim CJ, Jang IK

Prevalence and Predictors of Multiple Coronary Plaque Ruptures: In Vivo 3-Vessel Optical Coherence Tomography Imaging Study.
Arterioscler Thromb Vasc Biol. 2016;36(11):2229-2238 - PMID: 27634834 - DOI: 10.1161/ATVBAHA.116.307891

Babaev VR, Ding L, Zhang Y, May JM, Lin PC, Fazio S, Linton MF

Macrophage IKKα Deficiency Suppresses Akt Phosphorylation, Reduces Cell Survival, and Decreases Early Atherosclerosis.
Arterioscler Thromb Vasc Biol. 2016;36(4):598-607 - PMID: 26848161 - PMCID: PMC4808396 - DOI: 10.1161/ATVBAHA.115.306931

Roh K, Li H, Freeman RN, Zazzeron L, Lee A, Zhou C, Shen S, Xia P, Guerra JRB, Sheffield C, Padera TP, Zhou Y, Kim S, Aguirre A, Houstis N, Roh JD, Ichinose F, Malhotra R, Rosenzweig A, Rhee J

Exercise-Induced Cardiac Lymphatic Remodeling Mitigates Inflammation in the Aging Heart.
Aging Cell. 2025;24(6):e70043 - PMID: 40083143 - PMCID: PMC12151892 - DOI: 10.1111/acel.70043

Bhandari C, Fakhry J, Eroy M, Song JJ, Samkoe K, Hasan T, Hoyt K, Obaid G

Towards Photodynamic Image-Guided Surgery of Head and Neck Tumors: Photodynamic Priming Improves Delivery and Diagnostic Accuracy of Cetuximab-IRDye800CW.
Front Oncol. 2022;12:853660 - PMID: 35837101 - PMCID: PMC9273965 - DOI: 10.3389/fonc.2022.853660

Roussakis E, Spencer JA, Lin CP, Vinogradov SA

Two-photon antenna-core oxygen probe with enhanced performance.
Anal Chem. 2014;86(12):5937-45 - PMID: 24848643 - PMCID: PMC4066907 - DOI: 10.1021/ac501028m

Ayers BC, Olverson G, Chukwudi C, Higuita ML, Ajenu E, Bolger-Chen M, Catricala J, Pitti A, Moshe YK, Kang J, Aguirre AD, Sundt TM, Michel E, Osho A, Tessier SN, Alireza Rabi S, D'Alessandro D

Video kinematics of an unloaded, ex-vivo beating heart can predict future loaded heart function.
J Heart Lung Transplant. 2025;:ePub - PMID: 40716473 - DOI: 10.1016/j.healun.2025.07.023

Guastaldi FPS, Kostyra DM, Leartprapun N, Nadkarni S, Randolph MA, Redmond RW

Biochemical and Biomechanical Properties of Scaffold-Free Hyaline Cartilage Generated Under Dynamic Conditions.
Int J Mol Sci. 2025;26(10):ePub - PMID: 40429861 - PMCID: PMC12111924 - DOI: 10.3390/ijms26104719

Zeller MWG, Wang C, Keliher EJ, Wojtkiewicz GR, Aguirre A, Maresca K, Su C, Buckbinder L, Wang J, Nahrendorf M, Chen JW

Myeloperoxidase PET Imaging Tracks Intracellular and Extracellular Treatment Changes in Experimental Myocardial Infarction.
Int J Mol Sci. 2023;24(6):ePub - PMID: 36982778 - PMCID: PMC10057533 - DOI: 10.3390/ijms24065704

Rossi N, Bejar-Chapa M, Giorgino R, Scott BB, Kostyra DM, Peretti GM, Randolph MA, Redmond RW

Photosealed Neurorrhaphy Using Autologous Tissue.
Int J Mol Sci. 2024;25(13):ePub - PMID: 39000065 - PMCID: PMC11241074 - DOI: 10.3390/ijms25136958

Saad MA, Pawle R, Selfridge S, Contreras L, Xavierselvan M, Nguyen CD, Mallidi S, Hasan T

Optimizing Axial and Peripheral Substitutions in Si-Centered Naphthalocyanine Dyes for Enhancing Aqueous Solubility and Photoacoustic Signal Intensity.
Int J Mol Sci. 2023;24(3):ePub - PMID: 36768560 - PMCID: PMC9916426 - DOI: 10.3390/ijms24032241

Viana Cabral F, Quilez Alburquerque J, Roberts HJ, Hasan T

Shedding Light on Chemoresistance: The Perspective of Photodynamic Therapy in Cancer Management.
Int J Mol Sci. 2024;25(7):ePub - PMID: 38612619 - PMCID: PMC11011502 - DOI: 10.3390/ijms25073811

Wang Z, Jia H, Tian J, Soeda T, Vergallo R, Minami Y, Lee H, Aguirre A, Fujimoto JG, Jang IK

Computer-aided image analysis algorithm to enhance in vivo diagnosis of plaque erosion by intravascular optical coherence tomography.
Circ Cardiovasc Imaging. 2014;7(5):805-10 - PMID: 25034595 - DOI: 10.1161/CIRCIMAGING.114.002084

Nahrendorf M, Hoyer FF, Meerwaldt AE, van Leent MMT, Senders ML, Calcagno C, Robson PM, Soultanidis G, Pérez-Medina C, Teunissen AJP, Toner YC, Ishikawa K, Fish K, Sakurai K, van Leeuwen EM, Klein ED, Sofias AM, Reiner T, Rohde D, Aguirre AD, Wojtkiewicz G, Schmidt S, Iwamoto Y, Izquierdo-Garcia D, Caravan P, Swirski FK, Weissleder R, Mulder WJM

Imaging Cardiovascular and Lung Macrophages With the Positron Emission Tomography Sensor 64Cu-Macrin in Mice, Rabbits, and Pigs.
Circ Cardiovasc Imaging. 2020;13(10):e010586 - PMID: 33076700 - PMCID: PMC7583675 - DOI: 10.1161/CIRCIMAGING.120.010586

Bogdanov AA, Lin CP, Simonova M, Matuszewski L, Weissleder R

Cellular activation of the self-quenched fluorescent reporter probe in tumor microenvironment.
Neoplasia. 2002;4(3):228-36 - PMID: 11988842 - PMCID: PMC1531696 - DOI: 10.1038/sj.neo.7900238

Negri LB, Korupolu S, Farinelli W, Jolly AK, Redmond RW, Aggarwal S, Rahme LG, Gilchrist KH, Anderson RR, Gelfand JA

Antimicrobial Blue Light Reduces Human-Wound Pathogens' Resistance to Tetracycline-Class Antibiotics in Biofilms.
Cells. 2025;14(3):ePub - PMID: 39937010 - PMCID: PMC11817061 - DOI: 10.3390/cells14030219

Calcagno DM, Zhang C, Toomu A, Huang K, Ninh VK, Miyamoto S, Aguirre AD, Fu Z, Heller Brown J, King KR

SiglecF(HI) Marks Late-Stage Neutrophils of the Infarcted Heart: A Single-Cell Transcriptomic Analysis of Neutrophil Diversification.
J Am Heart Assoc. 2021;10(4):e019019 - PMID: 33525909 - PMCID: PMC7955351 - DOI: 10.1161/JAHA.120.019019

Minami Y, Wang Z, Aguirre AD, Ong DS, Kim CJ, Uemura S, Soeda T, Lee H, Fujimoto J, Jang IK

Clinical Predictors for Lack of Favorable Vascular Response to Statin Therapy in Patients With Coronary Artery Disease: A Serial Optical Coherence Tomography Study.
J Am Heart Assoc. 2017;6(11):ePub - PMID: 29092845 - PMCID: PMC5721742 - DOI: 10.1161/JAHA.117.006241

Hsiung PL, Pantanowitz L, Aguirre AD, Chen Y, Phatak D, Ko TH, Bourquin S, Schnitt SJ, Raza S, Connolly JL, Mashimo H, Fujimoto JG

Ultrahigh-resolution and 3-dimensional optical coherence tomography ex vivo imaging of the large and small intestines.
Gastrointest Endosc. 2005;62(4):561-74 - PMID: 16185971 - DOI: 10.1016/j.gie.2005.05.006

Feng X, Li GY, Jiang Y, Shortt-Nguyen O, Yun SH

Optical Coherence Elastography Measures Mechanical Tension in the Lens and Capsule.
Acta Biomater. 2025;199:252-261 - PMID: 40319993 - DOI: 10.1016/j.actbio.2025.05.009

Li GY, Feng X, Yun SH

Simultaneous tensile and shear measurement of the human cornea in vivo using S0- and A0-wave optical coherence elastography.
Acta Biomater. 2023;175:114-122 - PMID: 38101555 - PMCID: PMC10872441 - DOI: 10.1016/j.actbio.2023.12.019

Jaffe AT, Pallarès-López R, Raines JK, Aguirre AD, Anthony BW

Noninvasive Quantitative Compression Ultrasound Central Venous Pressure: A Clinical Pilot Study.
BME Front. 2025;6:0115 - PMID: 40110344 - PMCID: PMC11922486 - DOI: 10.34133/bmef.0115

Ong CS, Reinertsen E, Sun H, Moonsamy P, Mohan N, Funamoto M, Kaneko T, Shekar PS, Schena S, Lawton JS, D'Alessandro DA, Westover MB, Aguirre AD, Sundt TM

Prediction of operative mortality for patients undergoing cardiac surgical procedures without established risk scores.
J Thorac Cardiovasc Surg. 2021;165(4):1449-1459.e15 - PMID: 34607725 - PMCID: PMC8918430 - DOI: 10.1016/j.jtcvs.2021.09.010

Vergallo R, Ren X, Yonetsu T, Kato K, Uemura S, Yu B, Jia H, Abtahian F, Aguirre AD, Tian J, Hu S, Soeda T, Lee H, McNulty I, Park SJ, Jang Y, Prasad A, Lee S, Zhang S, Porto I, Biasucci LM, Crea F, Jang IK

Pancoronary plaque vulnerability in patients with acute coronary syndrome and ruptured culprit plaque: a 3-vessel optical coherence tomography study.
Am Heart J. 2013;167(1):59-67 - PMID: 24332143 - DOI: 10.1016/j.ahj.2013.10.011

Diamant N, Reinertsen E, Song S, Aguirre AD, Stultz CM, Batra P

Patient contrastive learning: A performant, expressive, and practical approach to electrocardiogram modeling.
PLoS Comput Biol. 2022;18(2):e1009862 - PMID: 35157695 - PMCID: PMC8880931 - DOI: 10.1371/journal.pcbi.1009862

Gonzalez G, Lakatos K, Hoballah J, Fritz-Klaus R, Al-Johani L, Brooker J, Jeong S, Evans CL, Krauledat P, Cramer DW, Hoffman RA, Hansen WP, Patankar MS

Characterization of Cell-Bound CA125 on Immune Cell Subtypes of Ovarian Cancer Patients Using a Novel Imaging Platform.
Cancers (Basel). 2021;13(9):ePub - PMID: 33922973 - PMCID: PMC8123299 - DOI: 10.3390/cancers13092072

Raghu VK, Moonsamy P, Sundt TM, Ong CS, Singh S, Cheng A, Hou M, Denning L, Gleason TG, Aguirre AD, Lu MT

Deep Learning to Predict Mortality After Cardiothoracic Surgery Using Preoperative Chest Radiographs.
Ann Thorac Surg. 2022;115(1):257-264 - PMID: 35609650 - PMCID: PMC11373441 - DOI: 10.1016/j.athoracsur.2022.04.056

Leaker BD, Wang Y, Tam J, Anderson RR

Analysis of culture and RNA isolation methods for precision-cut liver slices from cirrhotic rats.
Sci Rep. 2024;14(1):15349 - PMID: 38961190 - PMCID: PMC11222550 - DOI: 10.1038/s41598-024-66235-2

Salimi M, Tabatabaei N, Villiger M

Artificial neural network for enhancing signal-to-noise ratio and contrast in photothermal optical coherence tomography.
Sci Rep. 2024;14(1):10264 - PMID: 38704427 - PMCID: PMC11069506 - DOI: 10.1038/s41598-024-60682-7

Hwang W, McPartland T, Jeong S, Evans CL

A robust method for autofluorescence-free immunofluorescence using high-speed fluorescence lifetime imaging microscopy.
Sci Rep. 2025;15(1):5503 - PMID: 39953137 - PMCID: PMC11828918 - DOI: 10.1038/s41598-025-89142-6
542