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Ong J, Nazarian A, Tam J, Farinelli W, Korupolu S, Drake L, Isaacson B, Pasquina P, Williams D

An antimicrobial blue light device to manage infection at the skin-implant interface of percutaneous osseointegrated implants.
PLoS One. 2023;18(8):e0290347 - PMID: 37624860 - PMCID: PMC10456172 - DOI: 10.1371/journal.pone.0290347

Evans CL, Abu-Yousif AO, Park YJ, Klein OJ, Celli JP, Rizvi I, Zheng X, Hasan T

Killing hypoxic cell populations in a 3D tumor model with EtNBS-PDT.
PLoS One. 2011;6(8):e23434 - PMID: 21876751 - PMCID: PMC3158086 - DOI: 10.1371/journal.pone.0023434

Jung Y, Ng JH, Keating CP, Senthil-Kumar P, Zhao J, Randolph MA, Winograd JM, Evans CL

Comprehensive evaluation of peripheral nerve regeneration in the acute healing phase using tissue clearing and optical microscopy in a rodent model.
PLoS One. 2014;9(4):e94054 - PMID: 24714405 - PMCID: PMC3979924 - DOI: 10.1371/journal.pone.0094054

Hiremath P, Bauer M, Aguirre AD, Cheng HW, Unno K, Patel RB, Harvey BW, Chang WT, Groarke JD, Liao R, Cheng S

Identifying early changes in myocardial microstructure in hypertensive heart disease.
PLoS One. 2014;9(5):e97424 - PMID: 24831515 - PMCID: PMC4022613 - DOI: 10.1371/journal.pone.0097424

Wu JW, Jung Y, Yeh SA, Seo Y, Runnels JM, Burns CS, Mizoguchi T, Ito K, Spencer JA, Lin CP

Intravital fluorescence microscopy with negative contrast.
PLoS One. 2021;16(8):e0255204 - PMID: 34351959 - PMCID: PMC8341626 - DOI: 10.1371/journal.pone.0255204

Pitsillides CM, Runnels JM, Spencer JA, Zhi L, Wu MX, Lin CP

Cell labeling approaches for fluorescence-based in vivo flow cytometry.
Cytometry A. 2011;79(10):758-65 - PMID: 21905206 - PMCID: PMC3686107 - DOI: 10.1002/cyto.a.21125

Zhang L, Alt C, Li P, White RM, Zon LI, Wei X, Lin CP

An optical platform for cell tracking in adult zebrafish.
Cytometry A. 2011;81(2):176-82 - PMID: 22162445 - PMCID: PMC6383206 - DOI: 10.1002/cyto.a.21167

Fahlberg MD, Forward S, Assita ER, Mazzola M, Kiem A, Handley M, Yun SH, Kwok SJJ

Overcoming fixation and permeabilization challenges in flow cytometry by optical barcoding and multi-pass acquisition.
Cytometry A. 2024;105(11):838-848 - PMID: 39467031 - PMCID: PMC12707249 - DOI: 10.1002/cyto.a.24904

Peng F, Jeong S, Ho A, Evans CL

Recent progress in plasmonic nanoparticle-based biomarker detection and cytometry for the study of central nervous system disorders.
Cytometry A. 2021;99(11):1067-1078 - PMID: 34328262 - DOI: 10.1002/cyto.a.24489

Pitsillides CM, Joe EK, Wei X, Anderson RR, Lin CP

Selective cell targeting with light-absorbing microparticles and nanoparticles.
Biophys J. 2003;84(6):4023-32 - PMID: 12770906 - PMCID: PMC1302982 - DOI: 10.1016/S0006-3495(03)75128-5

Lee H, Alt C, Pitsillides CM, Puoris'haag M, Lin CP

In vivo imaging flow cytometer.
Opt Express. 2006;14(17):7789-800 - PMID: 19529148 - PMCID: PMC2801598 - DOI: 10.1364/oe.14.007789

Liu G, Kang JW, Bhagavatula S, Ahn SW, So PTC, Tearney GJ, Jonas O

Bendable long graded index lens microendoscopy.
Opt Express. 2022;30(20):36651-36664 - PMID: 36258589 - PMCID: PMC9662600 - DOI: 10.1364/OE.468827

Li C, Pastila RK, Pitsillides C, Runnels JM, Puoris'haag M, Côté D, Lin CP

Imaging leukocyte trafficking in vivo with two-photon-excited endogenous tryptophan fluorescence.
Opt Express. 2010;18(2):988-99 - PMID: 20173920 - PMCID: PMC3369551 - DOI: 10.1364/OE.18.000988

Wong KKY, Wei X, Ji N, Polli D, Vakoc BJ

Feature issue introduction: ultrafast optical imaging.
Opt Express. 2023;31(5):8201-8204 - PMID: 36859936 - DOI: 10.1364/OE.486054

Dannenberg PH, Wang J, Zhuo Y, Cho S, Kim KH, Yun SH

Droplet microfluidic generation of a million optical microparticle barcodes.
Opt Express. 2021;29(23):38109-38118 - PMID: 34808870 - PMCID: PMC8687102 - DOI: 10.1364/OE.439143

Singh AP, Göb M, Ahrens M, Eixmann T, Schulte B, Schulz-Hildebrandt H, Hüttmann G, Ellrichmann M, Huber R, Rahlves M

Virtual Hall sensor triggered multi-MHz endoscopic OCT imaging for stable real-time visualization.
Opt Express. 2024;32(4):5809-5825 - PMID: 38439298 - DOI: 10.1364/OE.514636

Legare; F, Evans CL, Ganikhanov F, Xie XS

Towards CARS Endoscopy.
Opt Express. 2006;14(10):4427-32 - PMID: 19516594 - DOI: 10.1364/oe.14.004427

Lee SY, Hui PC, Bouma B, Villiger M

Single-shot depth profiling by spatio-temporal encoding with a multimode fiber.
Opt Express. 2020;28(2):1124-1138 - PMID: 32121828 - PMCID: PMC7053500 - DOI: 10.1364/OE.383145

Evans CL, Xu X, Kesari S, Xie XS, Wong ST, Young GS

Chemically-selective imaging of brain structures with CARS microscopy.
Opt Express. 2007;15(19):12076-87 - PMID: 19547572 - DOI: 10.1364/oe.15.012076

Evans CL, Rizvi I, Hasan T, de Boer JF

In vitro ovarian tumor growth and treatment response dynamics visualized with time-lapse OCT imaging.
Opt Express. 2009;17(11):8892-906 - PMID: 19466138 - PMCID: PMC2836890 - DOI: 10.1364/oe.17.008892

Joo C, Evans CL, Stepinac T, Hasan T, de Boer JF

Diffusive and directional intracellular dynamics measured by field-based dynamic light scattering.
Opt Express. 2010;18(3):2858-71 - PMID: 20174115 - PMCID: PMC2839546 - DOI: 10.1364/OE.18.002858

de Groot M, Evans CL, de Boer JF

Self-interference fluorescence microscopy: three dimensional fluorescence imaging without depth scanning.
Opt Express. 2012;20(14):15253-62 - PMID: 22772223 - PMCID: PMC3601652 - DOI: 10.1364/OE.20.015253

Chen Y, Aguirre AD, Hsiung PL, Huang SW, Mashimo H, Schmitt JM, Fujimoto JG

Effects of axial resolution improvement on optical coherence tomography (OCT) imaging of gastrointestinal tissues.
Opt Express. 2008;16(4):2469-85 - PMID: 18542326 - DOI: 10.1364/oe.16.002469

Huang SW, Aguirre AD, Huber RA, Adler DC, Fujimoto JG

Swept source optical coherence microscopy using a Fourier domain mode-locked laser.
Opt Express. 2007;15(10):6210-7 - PMID: 19546926 - DOI: 10.1364/oe.15.006210

Aguirre AD, Sawinski J, Huang SW, Zhou C, Denk W, Fujimoto JG

High speed optical coherence microscopy with autofocus adjustment and a miniaturized endoscopic imaging probe.
Opt Express. 2010;18(5):4222-39 - PMID: 20389435 - PMCID: PMC2908909 - DOI: 10.1364/OE.18.004222

Aguirre AD, Hertz PR, Chen Y, Fujimoto JG, Piyawattanametha W, Fan L, Wu MC

Two-axis MEMS Scanning Catheter for Ultrahigh Resolution Three-dimensional and En Face Imaging.
Opt Express. 2007;15(5):2445-53 - PMID: 19532481 - DOI: 10.1364/oe.15.002445

Herz P, Chen Y, Aguirre A, Fujimoto J, Mashimo H, Schmitt J, Koski A, Goodnow J, Petersen C

Ultrahigh resolution optical biopsy with endoscopic optical coherence tomography.
Opt Express. 2004;12(15):3532-42 - PMID: 19483882 - DOI: 10.1364/opex.12.003532

Aguirre A, Nishizawa N, Fujimoto J, Seitz W, Lederer M, Kopf D

Continuum generation in a novel photonic crystal fiber for ultrahigh resolution optical coherence tomography at 800 nm and 1300 nm.
Opt Express. 2006;14(3):1145-60 - PMID: 19503436 - DOI: 10.1364/oe.14.001145

Truong NTP, Shishkov M, Jahan D, Bouma BE, Suter MJ, Adams DC

Development and characterization of a clinically viable metalens-enhanced optical endoscope.
Opt Express. 2025;33(23):49200-49210 - PMID: 41414318 - DOI: 10.1364/OE.570460

Shabahang S, Forward S, Yun SH

Polyethersulfone optical fibers with thermally induced microbubbles for custom side-scattering profiles.
Opt Express. 2019;27(5):7560-7567 - PMID: 30876318 - PMCID: PMC6825622 - DOI: 10.1364/OE.27.007560

Woodward RI, Majewski MR, Macadam N, Hu G, Albrow-Owen T, Hasan T, Jackson SD

Q-switched Dy:ZBLAN fiber lasers beyond 3 μm: comparison of pulse generation using acousto-optic modulation and inkjet-printed black phosphorus.
Opt Express. 2019;27(10):15032-15045 - PMID: 31163942 - DOI: 10.1364/OE.27.015032

Henry FP, Côté D, Randolph MA, Rust EAZ, Redmond RW, Kochevar IE, Lin CP, Winograd JM

Real-time in vivo assessment of the nerve microenvironment with coherent anti-Stokes Raman scattering microscopy.
Plast Reconstr Surg. 2009;123(2 Suppl):123S-130S - PMID: 19182671 - DOI: 10.1097/PRS.0b013e318191c5b8

Garibyan L, Moradi Tuchayi S, Javorsky E, Farinelli WA, Wang Y, Purschke M, Tam J, Ni P, Lian CG, Anderson RR

Subcutaneous Fat Reduction with Injected Ice Slurry.
Plast Reconstr Surg. 2020;145(4):725e-733e - PMID: 32221206 - DOI: 10.1097/PRS.0000000000006658

Koolen PGL, Li Z, Roussakis E, Paul MA, Ibrahim AMS, Matyal R, Huang T, Evans CL, Lin SJ

Oxygen-Sensing Paint-On Bandage: Calibration of a Novel Approach in Tissue Perfusion Assessment.
Plast Reconstr Surg. 2017;140(1):89-96 - PMID: 28654595 - DOI: 10.1097/PRS.0000000000003421

Roussakis E, Cascales JP, Yoeli D, Cralley A, Goss A, Wiatrowski A, Carvalho M, Moore HB, Moore EE, Huang CA, Evans CL

Versatile, in-line optical oxygen tension sensors for continuous monitoring during ex vivo kidney perfusion.
Sens Diagn. 2024;3(6):1014-1019 - PMID: 38882471 - PMCID: PMC11170683 - DOI: 10.1039/d3sd00240c

Framme C, Alt C, Schnell S, Sherwood M, Brinkmann R, Lin CP

Selective targeting of the retinal pigment epithelium in rabbit eyes with a scanning laser beam.
Invest Ophthalmol Vis Sci. 2007;48(4):1782-92 - PMID: 17389512 - DOI: 10.1167/iovs.06-0797

Wei X, Runnels JM, Lin CP

Selective uptake of indocyanine green by reticulocytes in circulation.
Invest Ophthalmol Vis Sci. 2003;44(10):4489-96 - PMID: 14507897 - PMCID: PMC2830078 - DOI: 10.1167/iovs.03-0041

Alt C, Runnels JM, Mortensen LJ, Zaher W, Lin CP

In vivo imaging of microglia turnover in the mouse retina after ionizing radiation and dexamethasone treatment.
Invest Ophthalmol Vis Sci. 2014;55(8):5314-9 - PMID: 25082884 - DOI: 10.1167/iovs.14-14254

Germann JA, Martínez-Enríquez E, Martínez-García MC, Kochevar IE, Marcos S

Corneal Collagen Ordering After In Vivo Rose Bengal and Riboflavin Cross-Linking.
Invest Ophthalmol Vis Sci. 2020;61(3):28 - PMID: 32186674 - PMCID: PMC7401826 - DOI: 10.1167/iovs.61.3.28

Seiler TG, Batista A, Frueh BE, Koenig K

Riboflavin Concentrations at the Endothelium During Corneal Cross-Linking in Humans.
Invest Ophthalmol Vis Sci. 2019;60(6):2140-2145 - PMID: 31099830 - DOI: 10.1167/iovs.19-26686

Kwok SJJ, Forward S, Wertheimer CM, Liapis AC, Lin HH, Kim M, Seiler TG, Birngruber R, Kochevar IE, Seiler T, Yun SH

Selective Equatorial Sclera Crosslinking in the Orbit Using a Metal-Coated Polymer Waveguide.
Invest Ophthalmol Vis Sci. 2019;60(7):2563-2570 - PMID: 31212308 - PMCID: PMC6586079 - DOI: 10.1167/iovs.19-26709

Wertheimer CM, Elhardt C, Kaminsky SM, Pham L, Pei Q, Mendes B, Afshar S, Kochevar IE

Enhancing Rose Bengal-Photosensitized Protein Crosslinking in the Cornea.
Invest Ophthalmol Vis Sci. 2019;60(6):1845-1852 - PMID: 31042790 - DOI: 10.1167/iovs.19-26604

Runnels JM, Zamiri P, Spencer JA, Veilleux I, Wei X, Bogdanov A, Lin CP

Imaging molecular expression on vascular endothelial cells by in vivo immunofluorescence microscopy.
Mol Imaging. 2006;5(1):31-40 - PMID: 16779968 - PMCID: PMC2801601

Wei X, Sipkins DA, Pitsillides CM, Novak J, Georgakoudi I, Lin CP

Real-time detection of circulating apoptotic cells by in vivo flow cytometry.
Mol Imaging. 2005;4(4):415-6 - PMID: 16285902 - PMCID: PMC2801924 - DOI: 10.2310/7290.2005.05148

Ayers BC, Aguirre AD, Sundt TM, Lu MT, Jassar A

An open-source, automated machine learning approach for large-scale image retrieval for thoracic aorta analysis studies.
JAMIA Open. 2025;8(4):ooaf066 - PMID: 40662082 - PMCID: PMC12257624 - DOI: 10.1093/jamiaopen/ooaf066

Alt C, Veilleux I, Lee H, Pitsillides CM, Côté D, Lin CP

Retinal flow cytometer.
Opt Lett. 2007;32(23):3450-2 - PMID: 18059963 - PMCID: PMC2794483 - DOI: 10.1364/ol.32.003450

Nam AS, Braaf B, Vakoc BJ

Using the dynamic forward scattering signal for optical coherence tomography based blood flow quantification.
Opt Lett. 2022;47(12):3083-3086 - PMID: 35709056 - PMCID: PMC9580005 - DOI: 10.1364/OL.455475

Lippok N, Vakoc BJ

RF properties of circular-ranging OCT signals.
Opt Lett. 2022;47(7):1903-1906 - PMID: 35363765 - PMCID: PMC9027934 - DOI: 10.1364/OL.450318

Harper DJ, Vakoc BJ

Relationship between axial resolution and signal-to-noise ratio in optical coherence tomography.
Opt Lett. 2022;47(6):1517-1520 - PMID: 35290353 - PMCID: PMC8958905 - DOI: 10.1364/OL.449421

Ruiz-Lopera S, Restrepo R, Cannon TM, Villiger M, Bouma BE, Uribe-Patarroyo N

Computational refocusing in phase-unstable polarization-sensitive optical coherence tomography.
Opt Lett. 2023;48(18):4765-4768 - PMID: 37707897 - PMCID: PMC10871002 - DOI: 10.1364/OL.499051
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