Bouma Lab

Manuel LDB, Basu D, Rollins MB, Vincely VD, Keahey P, Villiger M, Bayer CL, South PF, McPeak KM

Au Bipyramids as NIR-II Contrast Agents for In Vivo Plant Imaging.
ACS Appl Mater Interfaces. 2025;17(35):49183-49192 - PMID: 40838762 - PMCID: PMC12412101 - DOI: 10.1021/acsami.5c08908

Schmidt G, McAuley R, Bouma BE, Uribe-Patarroyo N

Asynchronous optical coherence elastography and directional phase gradient analysis.
J Biomed Opt. 2025;30(12):124506 - PMID: 40979890 - PMCID: PMC12447186 - DOI: 10.1117/1.JBO.30.12.124506

Masoumi S, Sheft M, Quémener M, Bédard A, Noël VP, Parent M, Villiger M, Côté DC

Catheter-based polarimetric imaging to complement MRI for deep brain stimulation neurosurgery.
Neurophotonics. 2025;12(3):035001 - PMID: 40735541 - PMCID: PMC12301623 - DOI: 10.1117/1.NPh.12.3.035001

Liu CJ, Ammon W, Jones RJ, Nolan JC, Gong D, Maffei C, Blanke N, Edlow BL, Augustinack JC, Magnain C, Yendiki A, Villiger M, Fischl B, Wang H

Three-dimensional fiber orientation mapping of ex vivo human brain at micrometer resolution.
Npj Imaging. 2025;3(1):13 - PMID: 40213097 - PMCID: PMC11978517 - DOI: 10.1038/s44303-025-00074-2

Bak S, Park SM, Song Y, Kim J, Nam TW, Han DW, Kim CS, Cho SW, Bouma BE, Lee H

High spectral energy density all-fiber nanosecond pulsed 1.7 μm light source for photoacoustic microscopy.
Photoacoustics. 2025;44:100744 - PMID: 40606570 - PMCID: PMC12221601 - DOI: 10.1016/j.pacs.2025.100744

Araki M, Park SJ, Dauerman HL, Uemura S, Kim JS, Di Mario C, Johnson TW, Guagliumi G, Kastrati A, Joner M, Holm NR, Alfonso F, Wijns W, Adriaenssens T, Nef H, Rioufol G, Amabile N, Souteyrand G, Meneveau N, Gerbaud E, Opolski MP, Gonzalo N, Tearney GJ, Bouma B, Aguirre AD, Mintz GS, Stone GW, Bourantas CV, Räber L, Gili S, Mizuno K, Kimura S, Shinke T, Hong MK, Jang Y, Cho JM, Yan BP, Porto I, Niccoli G, Montone RA, Thondapu V, Papafaklis MI, Michalis LK, Reynolds H, Saw J, Libby P, Weisz G, Iannaccone M, Gori T, Toutouzas K, Yonetsu T, Minami Y, Takano M, Raffel OC, Kurihara O, Soeda T, Sugiyama T, Kim HO, Lee T, Higuma T, Nakajima A, Yamamoto E, Bryniarski KL, Di Vito L, Vergallo R, Fracassi F, Russo M, Seegers LM, McNulty I, Park S, Feldman M, Escaned J, Prati F, Arbustini E, Pinto FJ, Waksman R, Garcia-Garcia HM, Maehara A, Ali Z, Finn AV, Virmani R, Kini AS, Daemen J, Kume T, Hibi K, Tanaka A, Akasaka T, Kubo T, Yasuda S, Croce K, Granada JF, Lerman A, Prasad A, Regar E, Saito Y, Sankardas MA, Subban V, Weissman NJ, Chen Y, Yu B, Nicholls SJ, Barlis P, West NEJ, Arbab-Zadeh A, Ye JC, Dijkstra J, Lee H, Narula J, Crea F, Nakamura S, Kakuta T, Fujimoto J, Fuster V, Jang IK

Author Correction: Optical coherence tomography in coronary atherosclerosis assessment and intervention.
Nat Rev Cardiol. 2024;21(5):348 - PMID: 38110566 - PMCID: PMC11987009 - DOI: 10.1038/s41569-023-00982-z

Schmidt G, Bouma BE, Uribe-Patarroyo N

Asynchronous, semi-reverberant elastography.
Optica. 2024;11(9):1285-1294 - PMID: 40109673 - PMCID: PMC11922557 - DOI: 10.1364/optica.528507

Salimi M, Tabatabaei N, Villiger M

Artificial neural network for enhancing signal-to-noise ratio and contrast in photothermal optical coherence tomography.
Sci Rep. 2024;14(1):10264 - PMID: 38704427 - PMCID: PMC11069506 - DOI: 10.1038/s41598-024-60682-7

Rao Chintada B, Keahey P, Uribe-Patarroyo N, Bouma BE, Villiger M

Sample tilting for speckle suppression through angular compounding.
Opt Lett. 2024;49(17):4979-4982 - PMID: 39208013 - PMCID: PMC11827440 - DOI: 10.1364/OL.533271

Chintada BR, Ruiz-Lopera S, Restrepo R, Bouma BE, Villiger M, Uribe-Patarroyo N

Probabilistic volumetric speckle suppression in OCT using deep learning.
Biomed Opt Express. 2024;15(8):4453-4469 - PMID: 39346991 - PMCID: PMC11427188 - DOI: 10.1364/BOE.523716

Masoumi S, Lee J, Jones GL, Quémener M, Parent M, Bouma BE, Hariri LP, Côté DC, Villiger M

Absolute depth-resolved optic axis measurement with catheter-based polarization sensitive optical coherence tomography.
Biomed Opt Express. 2024;15(12):6957-6976 - PMID: 39679397 - PMCID: PMC11640563 - DOI: 10.1364/BOE.538560

Mansutti G, Villiger M, Bouma BE, Uribe-Patarroyo N

Full-field amplitude speckle decorrelation angiography.
Biomed Opt Express. 2024;15(10):5756-5772 - PMID: 39421771 - PMCID: PMC11482163 - DOI: 10.1364/BOE.530993

Haft-Javaherian M, Villiger M, Otsuka K, Daemen J, Libby P, Golland P, Bouma BE

Segmentation of anatomical layers and imaging artifacts in intravascular polarization sensitive optical coherence tomography using attending physician and boundary cardinality losses.
Biomed Opt Express. 2024;15(3):1719-1738 - PMID: 38495711 - PMCID: PMC10942710 - DOI: 10.1364/BOE.514673

Jones GL, Albadawi H, Hariri LP, Bouma BE, Oklu R, Villiger M

Aging of deep venous thrombosis in-vivo using polarization sensitive optical coherence tomography.
Biomed Opt Express. 2024;15(6):3627-3638 - PMID: 38867781 - PMCID: PMC11166430 - DOI: 10.1364/BOE.522238

Bec J, Zhou X, Villiger M, Southard JA, Bouma B, Marcu L

Dual modality intravascular catheter system combining pulse-sampling fluorescence lifetime imaging and polarization-sensitive optical coherence tomography.
Biomed Opt Express. 2024;15(4):2114-2132 - PMID: 38633060 - PMCID: PMC11019710 - DOI: 10.1364/BOE.516515

Lee H, Seeger MR, Bouma BE

Electronically Controlled Dual-Wavelength Switchable SRS Fiber Amplifier in the NIR-II Region for Multispectral Photoacoustic Microscopy.
Laser Photon Rev. 2024;18(10):ePub - PMID: 39720420 - PMCID: PMC11666251 - DOI: 10.1002/lpor.202400144

Liu X, Jiang L, Ke M, Sigal IA, Chua J, Hoang QV, Chia AW, Najjar RP, Tan B, Cheong J, Bellemo V, Chong RS, Girard MJA, Ang M, Liu M, Garhöfer G, Barathi VA, Saw SM, Villiger M, Schmetterer L

Posterior scleral birefringence measured by triple-input polarization-sensitive imaging as a biomarker of myopia progression.
Nat Biomed Eng. 2023;7(8):986-1000 - PMID: 37365268 - PMCID: PMC10427432 - DOI: 10.1038/s41551-023-01062-w

Lee SY, Parot VJ, Bouma BE, Villiger M

Efficient dispersion modeling in optical multimode fiber.
Light Sci Appl. 2023;12(1):31 - PMID: 36720851 - PMCID: PMC9889807 - DOI: 10.1038/s41377-022-01061-7

Ruiz-Lopera S, Restrepo R, Cannon TM, Villiger M, Bouma BE, Uribe-Patarroyo N

Computational refocusing in phase-unstable polarization-sensitive optical coherence tomography.
Opt Lett. 2023;48(18):4765-4768 - PMID: 37707897 - PMCID: PMC10871002 - DOI: 10.1364/OL.499051

Leitgeb RA, Bouma B, Grieve K, Hendon C, Podoleanu A, Wojtkowski M, Yasuno Y

30 Years of Optical Coherence Tomography: introduction to the feature issue.
Biomed Opt Express. 2023;14(10):5484-5487 - PMID: 37854547 - PMCID: PMC10581797 - DOI: 10.1364/BOE.505569

Jones GL, Xiong Q, Liu X, Bouma BE, Villiger M

Single-input polarization-sensitive optical coherence tomography through a catheter.
Biomed Opt Express. 2023;14(9):4609-4626 - PMID: 37791262 - PMCID: PMC10545192 - DOI: 10.1364/BOE.497123

Cannon TM, Bouma BE, Uribe-Patarroyo N

Mapping optical scattering properties to physical particle information in singly and multiply scattering samples.
Biomed Opt Express. 2023;14(8):4326-4348 - PMID: 37799686 - PMCID: PMC10549752 - DOI: 10.1364/BOE.494518

Chintada BR, Ruiz-Lopera S, Restrepo R, Bouma BE, Villiger M, Uribe-Patarroyo N

Probabilistic volumetric speckle suppression in OCT using deep learning.
ArXiv. 2023;:ePub - PMID: 38106457 - PMCID: PMC10723542

Araki M, Park SJ, Dauerman HL, Uemura S, Kim JS, Di Mario C, Johnson TW, Guagliumi G, Kastrati A, Joner M, Holm NR, Alfonso F, Wijns W, Adriaenssens T, Nef H, Rioufol G, Amabile N, Souteyrand G, Meneveau N, Gerbaud E, Opolski MP, Gonzalo N, Tearney GJ, Bouma B, Aguirre AD, Mintz GS, Stone GW, Bourantas CV, Räber L, Gili S, Mizuno K, Kimura S, Shinke T, Hong MK, Jang Y, Cho JM, Yan BP, Porto I, Niccoli G, Montone RA, Thondapu V, Papafaklis MI, Michalis LK, Reynolds H, Saw J, Libby P, Weisz G, Iannaccone M, Gori T, Toutouzas K, Yonetsu T, Minami Y, Takano M, Raffel OC, Kurihara O, Soeda T, Sugiyama T, Kim HO, Lee T, Higuma T, Nakajima A, Yamamoto E, Bryniarski KL, Di Vito L, Vergallo R, Fracassi F, Russo M, Seegers LM, McNulty I, Park S, Feldman M, Escaned J, Prati F, Arbustini E, Pinto FJ, Waksman R, Garcia-Garcia HM, Maehara A, Ali Z, Finn AV, Virmani R, Kini AS, Daemen J, Kume T, Hibi K, Tanaka A, Akasaka T, Kubo T, Yasuda S, Croce K, Granada JF, Lerman A, Prasad A, Regar E, Saito Y, Sankardas MA, Subban V, Weissman NJ, Chen Y, Yu B, Nicholls SJ, Barlis P, West NEJ, Arbab-Zadeh A, Ye JC, Dijkstra J, Lee H, Narula J, Crea F, Nakamura S, Kakuta T, Fujimoto J, Fuster V, Jang IK

Optical coherence tomography in coronary atherosclerosis assessment and intervention.
Nat Rev Cardiol. 2022;19(10):684-703 - PMID: 35449407 - PMCID: PMC9982688 - DOI: 10.1038/s41569-022-00687-9

Lee SY, Parot VJ, Bouma BE, Villiger M

Confocal 3D reflectance imaging through multimode fiber without wavefront shaping.
Optica. 2022;9(1):112-120 - PMID: 35419464 - PMCID: PMC9005109 - DOI: 10.1364/OPTICA.446178

Cannon TM, Uribe-Patarroyo N, Villiger M, Bouma BE

Measuring collagen injury depth for burn severity determination using polarization sensitive optical coherence tomography.
Sci Rep. 2022;12(1):10479 - PMID: 35729262 - PMCID: PMC9213509 - DOI: 10.1038/s41598-022-14326-3

Pahlevaninezhad M, Huang YW, Pahlevani M, Bouma B, Suter MJ, Capasso F, Pahlevaninezhad H

Metasurface-based bijective illumination collection imaging provides high-resolution tomography in three dimensions.
Nat Photonics. 2022;16(3):203-211 - PMID: 35937091 - PMCID: PMC9355264 - DOI: 10.1038/s41566-022-00956-6

Nandy S, Berigei SR, Keyes CM, Muniappan A, Auchincloss HG, Lanuti M, Roop BW, Shih AR, Colby TV, Medoff BD, Suter MJ, Villiger M, Hariri LP

Polarization-Sensitive Endobronchial Optical Coherence Tomography for Microscopic Imaging of Fibrosis in Interstitial Lung Disease.
Am J Respir Crit Care Med. 2022;206(7):905-910 - PMID: 35675552 - PMCID: PMC12042782 - DOI: 10.1164/rccm.202112-2832LE

Lee H, Seeger MR, Lippok N, Nadkarni SK, van Soest G, Bouma BE

Nanosecond SRS fiber amplifier for label-free near-infrared photoacoustic microscopy of lipids.
Photoacoustics. 2022;25:100331 - PMID: 35096525 - PMCID: PMC8783138 - DOI: 10.1016/j.pacs.2022.100331

DePaoli D, Côté DC, Bouma BE, Villiger M

Endoscopic imaging of white matter fiber tracts using polarization-sensitive optical coherence tomography.
Neuroimage. 2022;264:119755 - PMID: 36400379 - PMCID: PMC9802682 - DOI: 10.1016/j.neuroimage.2022.119755

Keahey P, Si P, Razavi M, Yu S, Lippok N, Villiger M, Padera TP, de la Zerda A, Bouma B

Spectral- and Polarization-Dependent Scattering of Gold Nanobipyramids for Exogenous Contrast in Optical Coherence Tomography.
Nano Lett. 2021;21(20):8595-8601 - PMID: 34644094 - PMCID: PMC8555503 - DOI: 10.1021/acs.nanolett.1c02291

Salimi MH, Villiger M, Tabatabaei N

Transient-mode photothermal optical coherence tomography.
Opt Lett. 2021;46(22):5703-5706 - PMID: 34780441 - PMCID: PMC10801791 - DOI: 10.1364/OL.443987

Nandy S, Helland TL, Roop BW, Raphaely RA, Ly A, Lew M, Berigei SR, Villiger M, Sorokina A, Szabari MV, Fintelmann FJ, Suter MJ, Hariri LP

Rapid non-destructive volumetric tumor yield assessment in fresh lung core needle biopsies using polarization sensitive optical coherence tomography.
Biomed Opt Express. 2021;12(9):5597-5613 - PMID: 34692203 - PMCID: PMC8515979 - DOI: 10.1364/BOE.433346

Cannon TM, Bouma BE, Uribe-Patarroyo N

Layer-based, depth-resolved computation of attenuation coefficients and backscattering fractions in tissue using optical coherence tomography.
Biomed Opt Express. 2021;12(8):5037-5056 - PMID: 34513241 - PMCID: PMC8407832 - DOI: 10.1364/BOE.427833

van Zandvoort LJC, Otsuka K, Villiger M, Neleman T, Dijkstra J, Zijlstra F, van Mieghem NM, Bouma BE, Daemen J

Polarimetric Signatures of Coronary Thrombus in Patients With Acute Coronary Syndrome.
Circ J. 2021;85(10):1806-1813 - PMID: 33828020 - PMCID: PMC10782573 - DOI: 10.1253/circj.CJ-20-0862

Van Zandvoort LJC, Otsuka K, Bouma BE, Daemen J

Intracoronary polarimetry of a honeycomb-like structure.
EuroIntervention. 2021;16(17):1422-1423 - PMID: 31403462 - PMCID: PMC7238317 - DOI: 10.4244/EIJ-D-19-00431

Ren J, Shishkov M, Villiger ML, Otsuka K, Nadkarni SK, Bouma BE

Single-catheter dual-modality intravascular imaging combining IVUS and OFDI: a holistic structural visualisation of coronary arteries.
EuroIntervention. 2021;17(11):e919-e922 - PMID: 34219665 - PMCID: PMC8649034 - DOI: 10.4244/EIJ-D-20-00990

Ren J, Bouma BE

Whole Murine Brain Imaging Based on Optical Elastic Scattering.
Adv Exp Med Biol. 2021;3233:109-125 - PMID: 34053025 - DOI: 10.1007/978-981-15-7627-0_6

Struyvenberg M, Kahn A, Fleischer D, Swager AF, Bouma B, Ganguly EK, Konda V, Lightdale CJ, Pleskow D, Sethi A, Smith M, Trindade AJ, Wallace MB, Wang K, Wolfsen HC, Tearney GJ, Curvers WL, Leggett CL, Bergman JJ

Expert assessment on volumetric laser endomicroscopy full scans in Barrett's esophagus patients with or without high grade dysplasia or early cancer.
Endoscopy. 2020;53(3):218-225 - PMID: 32515006 - DOI: 10.1055/a-1194-0397

Snyder PJ, Alber J, Alt C, Bain LJ, Bouma BE, Bouwman FH, DeBuc DC, Campbell MCW, Carrillo MC, Chew EY, Cordeiro MF, Dueñas MR, Fernández BM, Koronyo-Hamaoui M, La Morgia C, Carare RO, Sadda SR, van Wijngaarden P, Snyder HM

Retinal imaging in Alzheimer's and neurodegenerative diseases.
Alzheimers Dement. 2020;17(1):103-111 - PMID: 33090722 - PMCID: PMC8062064 - DOI: 10.1002/alz.12179

Deliyski DD, Shishkov M, Mehta DD, Ghasemzadeh H, Bouma B, Zañartu M, de Alarcon A, Hillman RE

Laser-Calibrated System for Transnasal Fiberoptic Laryngeal High-Speed Videoendoscopy.
J Voice. 2019;35(1):122-128 - PMID: 31383516 - PMCID: PMC6995434 - DOI: 10.1016/j.jvoice.2019.07.013
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